Japan's 3D Secure 2.0 Mandate: E-commerce Compliance Requirements Starting April 2025
Regulatory Background in Japan
Starting April 2025, Japan has officially mandated the implementation of "3D Secure 2.0" for credit card payments across all e-commerce platforms. This regulatory change stems from Japan's Ministry of Economy, Trade and Industry (METI) "Credit Card Security Guidelines," backed by the Installment Sales Act. Compliance is mandatory for all EC businesses operating in Japan, regardless of size or transaction volume.
Credit card fraud in Japan has reached critical levels. According to the Japan Credit Association, fraudulent credit card losses in 2024 reached a record high of 55.5 billion yen (approximately $370 million USD)—more than double the 2020 figures. Notably, 92.5% of these losses resulted from "card-not-present" fraud in online transactions, highlighting the urgent need for enhanced digital payment security.
In response to this crisis, Japanese regulators have mandated 3D Secure 2.0 implementation across all e-commerce operations. This requirement extends beyond mere recommendation—non-compliance may result in payment processor contract termination and operational disruption. Given the legal mandate, businesses of all scales operating in the Japanese market must ensure compliance.
Understanding 3D Secure 2.0

3D Secure 2.0 (EMV 3D Secure) represents the latest iteration of online payment authentication technology. Compared to its predecessor, it offers several key advantages:
- Risk-Based Authentication: Low-risk transactions receive streamlined authentication based on comprehensive risk assessment
- Enhanced User Experience: One-time passwords, biometric authentication, and other rapid verification methods
- Strengthened Security: Significantly improved fraud prevention capabilities
- Multi-Device Optimization: Seamless functionality across smartphones, tablets, and various digital environments
Impact on Customers and Merchants
For customers, this implementation introduces additional authentication steps during checkout, which may initially seem inconvenient. However, it provides substantial benefits including enhanced card information protection and simplified fraud reporting processes when incidents occur.
For e-commerce operators, while 3D Secure 2.0 reduces fraud and chargebacks, initial implementation may temporarily increase cart abandonment rates as customers adapt to the new authentication process.
E-commerce Platform Compliance Strategies
Shopify Payments Users: Streamlined Compliance
Businesses utilizing Shopify Payments benefit from platform-level technical compliance that's already been implemented:
- Standard checkout flows require no additional configuration
- Payment processing partner Stripe provides comprehensive 3D Secure 2.0 support
Key Advantage: Shop Pay implementation can eliminate 3D Secure authentication requirements entirely. This is possible because Shop Pay incorporates:
- Rigorous initial identity verification during registration
- SMS authentication for each transaction
- Device-binding fraud prevention measures
These multi-layered security measures satisfy the exception requirements outlined in Japan's Credit Card Security Guidelines 6.0, enabling smooth purchase experiences without additional authentication steps and significantly reducing cart abandonment. (For detailed information: Shop Pay and 3D Secure Authentication: Why Repeated Authentication Isn't Required)
However, businesses with custom development integrations using legacy Stripe APIs (such as Charges API) must migrate to newer APIs (Payment Intents, etc.) by June 30, 2025.
Other Payment Service Compliance Status
- PayPal: Legacy "Web Payments Plus" service is non-compliant. Migration to "Advanced Credit Card Payment Service" or "Standard Payment Service" is required, necessitating new merchant approval processes
- Stripe: Full compliance achieved. However, custom integrations using Charges API or Orders API require migration to current APIs
- Square: Compliance complete with no additional configuration required
Strategic Implementation Guidelines

Minimizing Conversion Rate Impact
- Proactive Customer Communication: Website notifications, email newsletters, and social media announcements
- Authentication Process Education: Clear, concise explanations on checkout pages
- Enhanced Support Infrastructure: Comprehensive FAQs and customer support preparation for authentication-related inquiries
- Purchase Process Optimization: Streamlining non-authentication checkout elements
Privacy Law Compliance Considerations
- Privacy policy review and updates
- Consent acquisition for cross-border data sharing with international card companies
Liability Shift Benefits
3D Secure 2.0 implementation transfers fraud liability to card-issuing institutions (Note: Visa maintains merchant liability for accounts exceeding $7,500 monthly in fraudulent chargebacks).
Exempted Transaction Categories
The following transactions are currently exempt from mandatory implementation:
- Phone, fax, and mail-order transactions
- B2B transactions using corporate contract cards
- Utility payments, taxes, insurance premiums, and similar services
However, depending on fraud occurrence patterns, these transaction types may become subject to future requirements.
Strategic Summary for International Operations in Japan
Japan's 3D Secure 2.0 mandate represents a critical transformation for e-commerce operations in one of the world's largest digital commerce markets. Key considerations for international businesses include:
- Mandatory compliance starting April 2025 for all Japanese e-commerce operations
- Significant fraud reduction and chargeback mitigation benefits
- Strategic customer communication and technical integration requirements for successful implementation
While initial implementation may present challenges related to checkout flow changes, the long-term result is a more secure online shopping environment that benefits both merchants and consumers. Success depends on combining technical compliance with comprehensive customer education and robust support infrastructure during the transition period.
Flagship was recognized by Shopify as "Enterprise Partner of the Year" in 2024, specializing in large-scale, high-security e-commerce site development. For concerns regarding 3D Secure 2.0 compliance and secure e-commerce construction in the Japanese market, please don't hesitate to consult with our team.
For detailed information about cases where 3D Secure authentication becomes unnecessary, please refer to this article:
Shop Pay and 3D Secure Authentication: Why Repeated Authentication Isn't Required
※This article's content is based on information available as of April 2025. For the latest updates, please confirm with respective payment service providers.
Reference Materials
- METI "Credit Card Security Guidelines Version 6.0" (Published March 2025)
- METI "Basic Policy for Supervision Based on Installment Sales Act (Post-Payment Sector)"
- Shopify Payments
- Stripe 3D Secure 2 Guide
- Stripe Regarding 3D Secure 2 Non-Compatible APIs
- Square Response to Mandatory 3D Secure Implementation
- PayPal EMV-3D Secure (3DS 2.0) Implementation Guide